NIH ODSS to Host Sessions at Intelligent Systems for Molecular Biology Annual Conference

Tuesday, July 13, 2021

Sessions to be held July 27-28

The National Institutes of Health (NIH) Office of Data Science Strategy (ODSS) will host a two-day special track of sessions at the 29th Conference on Intelligent Systems for Molecular Biology (ISMB) and the 20th European Conference on Computational Biology (ECCB). The ODSS-led sessions will be held July 27-28 with the full conference scheduled for July 25-30.

The special track will include sessions on the NIH Cloud Platform Interoperability (NCPI) efforts, FAIR data and repositories, diversity in data science training and research, open research software, reproducibility and reuse, and bridging international efforts in data science. 

Join the conversation on Twitter! #NIHData #ismbeccb2021

Agenda

Tuesday, July 27, 2021
Time (All times ET)Event
7:00–8:20 a.m. 

Session I: The NIH Cloud Platforms Interoperability (NCPI) Efforts

Moderator: Susan Gregurick, Ph.D., NIH Associate Director for Data Science and Director, ODSS

7:00–7:10 a.m.Introductions
Susan Gregurick, Ph.D.
7:10–7:33 a.m.Federated and FAIR Systems Interoperation in NCPI
Brian O’Connor, Ph.D., Principal Investigator, Data Sciences Platform, Broad Institute of MIT and Harvard
7:33–7:56 a.m.Clinical and Phenotypic Data Interoperability using FHIR in NCPI
Allison Heath, Ph.D., Director, Data Technology and Innovation, Children’s Hospital of Philadelphia
Robert Carroll, Ph.D., Assistant Professor, Vanderbilt University
7:56–8:20 a.m.Modeling the computing requirements and costs for genomics analysis in the cloud
Michael Schatz, Bloomberg Distinguished Associate Professor of Computer Science and Biology, Johns Hopkins University
8:20–8:40 a.m.BREAK
8:40–10:00 a.m.

Session II: FAIR Data/Repositories

Moderators: 
Jennie Larkin, Ph.D., Deputy Director of Neuroscience, National Institute on Aging
Ishwar Chandramouliswaran, Deputy Director, Office of Data Science and Emerging Technologies, National Institute of Allergy and Infectious Diseases

8:40–8:45 a.m.NIH Activities to Support a FAIR Repository Ecosystem
Jennie Larkin, Ph.D., and Ishwar Chandramouliswaran
8:45–9:00 a.m.FAIR Research - What is in it for the Researchers?
Mark Hahnel, Ph.D., Founder and CEO, Figshare
9:00–9:15 a.m.The Tribal Nature of Data Sharing
Lara Mangravite, Ph.D., President, Sage Bionetworks
9:15–9:30 a.m.FAIR Data and FAIR Repositories
John Chodacki, Director, University of California Curation Center (UC3)
9:30–9:45 a.m.Bridging from Researcher Data Management to ELIXIR Archives in the RDM Lifecycle
Carole Goble, CBE FREng FBCS CITP, Professor of Computer Science at The University of Manchester, UK
9:45–10:00 a.m.An Introduction to ICPSR: A Place to Discover and Access Social and Behavioral Science Data for Secondary Analysis 
Sandra Tang, Ph.D., Assistant Research Scientist, Inter-university Consortium for Political and Social Research (ICPSR), University of Michigan
10:00–10:20 a.m.BREAK
10:20–11:20 a.m. 

Session III (Panel): Diversity in Data Science Training and Research

Moderators: 
Dr. Susan Gregurick
Karol Watson, M.D., Ph.D., Professor of Medicine/Cardiology, David Geffen School of Medicine, University of California, Los Angeles (UCLA)

Panelists:
Marcela Nava, Ph.D., Assistant Professor in Practice, School of Social Work, University of Texas at Arlington
Omolola Ogunyemi, Ph.D., Director, Center for Biomedical Informatics, Charles R. Drew University of Medicine and Science
Joshua Pritchett, M.D., Fellow, Hematology and Medical Oncology, Mayo Clinic

Wednesday, July 28, 2021
Time (All times ET)Event
7:00–8:20 a.m.

Session IV: Open Research Software

Moderator: Heidi Sofia, Ph.D., Program Director, Division of Genomic Medicine, National Human Genome Research Institute

7:00–7:10 a.m.Introductions & Welcome
Susan Gregurick, Ph.D.
7:10–7:24 a.m.mPATH: A Digital Health Navigator
Ajay Dharod, M.D., Assistant Professor of Medicine and Vice Chair of Informatics and Analytics, Department of Internal Medicine, Wake Forest School of Medicine
7:24–7:38 a.m.Software and Science at the Open Force Field Initiative 
Jeff Wagner, Ph.D., Senior Software Scientist, Open Force Field Initiative
7:38–7:52 a.m.UR_EAR--A Web App supporting computational models for auditory-nerve and midbrain responses 
Laurel Carney, Ph.D., Marylou Ingram Professor of Biomedical Engineering and Professor of Neuroscience, University of Rochester
7:52–8:06 a.m.Manual Brain Segmentation Workflows Using the SPINE Virtual Laboratory: from Desktop to Cloud 
Alfredo Morales Pinzon, Ph.D., Postdoctoral Research Fellow of Radiology, Harvard Medical School
8:06–8:20 a.m.Human AI Loop in Cloud for Distributed Computation 
Pinaki Sarder, Ph.D., Assistant Professor, Department of Pathology and Anatomical Sciences, Jacobs School of Medicine & Biomedical Sciences, University at Buffalo
8:20–8:40 a.m.BREAK
8:40–10:00 a.m.

Session V: Reproducibility & Re-use

Moderator: Alex Bui, Ph.D., Professor of Radiological Sciences, Bioengineering, and Bioinformatics; and Director of the Medical & Imaging Informatics Group, David Geffen School of Medicine, UCLA

8:40–8:44 a.m.Introduction and Welcome
Alex Bui, Ph.D.
8:44–9:03 a.m.A Framework for Making Predictive Models Useful in Medicine
Nigam Shah, Ph.D., Professor of Medicine (Biomedical Informatics) at Stanford University, Associate CIO for Data Science at Stanford Healthcare
9:03–9:22 a.m.Veridical Data Science for precision medicine: subgroup discovery through staDISC
Bin Yu, Ph.D., Chancellor’s Professor, Departments of Statistics and of Electrical Engineering & Computer Sciences, University of California at Berkeley
9:22–9:41 a.m.PREMIERE: A community-driven platform for reproducibility and reuse in biomedical predictive modeling
Anders O. Garlid, Ph.D., Staff Research Assistant, David Geffen School of Medicine, UCLA
9:41–10:00 a.m.TBA
Yasset Perez-Riverol, Ph.D., Technical Coordinator at European Bioinformatics Institute
10:00–10:20 a.m.BREAK
10:20–11:20 a.m.

Session VI (Panel): Bridging International Efforts in Data Science
Moderator: Rolf Apweiler, Ph.D., Director, European Bioinformatics Institute (EMBL-EBI)

Panelists:
Griffin Weber, M.D., Ph.D., Director, Biomedical Research Bioinformatics Core,  Beth Israel Deaconess Medical Center, and Associate Professor of Biomedical Informatics, Harvard Medical School
Claudia Bauzer Medeiros, Ph.D., Professor of Databases at the Institute of Computing, University of Campinas (Unicamp), Brazil
Chuck Cook, Ph.D., Program Manager, Global Biodata Coalition

This page last reviewed on April 6, 2023